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Bio-MUST-Apps-FortyTwo-0.210570
River stage one • 1 direct dependent • 1 total dependent

Changes for version 0.210570 - 2021-02-27

  • Additions
    • 42: Documented metagenomic run_mode in the Manual
  • Changes
    • 42: Tweaked column heads of debrief-42.pl (and renamed script)

Documentation

compress-db.pl
Post-process assembler for transcript enrichment using 42
debrief-42.pl
Summarize the results of a 42 metagenomic run
forty-two.pl
The Answer to the Ultimate Question of Phylogenomics
leel.pl
The Elite of the Phylogenomic Back-Translators
yaml-generator-42.pl
Interactive or batch generator for 42 YAML config files
FortyTwo::Manual
User Guide for Forty-Two

Modules

Bio::MUST::Apps::Debrief42
Main class for debrief-42 tool
Bio::MUST::Apps::Debrief42::OrgReport
Internal class for tabular tax-report parser
Bio::MUST::Apps::Debrief42::RunReport
Internal class for tabular tax-report parser
Bio::MUST::Apps::Debrief42::TaxReport
Front-end class for tabular tax-report parser
Bio::MUST::Apps::Debrief42::TaxReport::NewSeq
Internal class for tabular tax-report parser
Bio::MUST::Apps::FortyTwo
Main class for forty-two tool
Bio::MUST::Apps::FortyTwo::AliProcessor
Internal class for forty-two tool
Bio::MUST::Apps::FortyTwo::OrgProcessor
Internal class for forty-two tool
Bio::MUST::Apps::FortyTwo::RunProcessor
Internal class for forty-two tool
Bio::MUST::Apps::Leel
Main class for leel tool
Bio::MUST::Apps::Leel::AliProcessor
Internal class for leel tool
Bio::MUST::Apps::Leel::OrgProcessor
Internal class for leel tool
Bio::MUST::Apps::Leel::RunProcessor
Internal class for leel tool
Bio::MUST::Apps::Roles::AliProcable
Attributes and methods common to AliProcessor objects
Bio::MUST::Apps::Roles::Configable
Attributes and methods common to Leel and FortyTwo objects
Bio::MUST::Apps::Roles::OrgProcable
Attributes and methods common to OrgProcessor objects
Bio::MUST::Apps::Roles::RunProcable
Attributes and methods common to RunProcessor objects
Bio::MUST::Apps::SlaveAligner::Local
Internal class for slave-aligner

Other files