NAME
Bio::TreeIO::TreeEventBuilder - Build Bio::Tree::Tree's and Bio::Tree::Node's from Events
SYNOPSIS
# internal use only
DESCRIPTION
This object will take events and build a Bio::Tree::TreeI compliant object makde up of Bio::Tree::NodeI objects.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing listsSupport
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issuesAUTHOR - Jason Stajich
Email jason-at-bioperl.org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::TreeIO::TreeEventBuilder->new();
Function: Builds a new Bio::TreeIO::TreeEventBuilder object
Returns : Bio::TreeIO::TreeEventBuilder
Args :treetype
Title : treetype
Usage : $obj->treetype($newval)
Function:
Returns : value of treetype
Args : newvalue (optional)nodetype
Title : nodetype
Usage : $obj->nodetype($newval)
Function:
Returns : value of nodetype
Args : newvalue (optional)SAX methods
start_document
Title : start_document
Usage : $handler->start_document
Function: Begins a Tree event cycle
Returns : none
Args : noneend_document
Title : end_document
Usage : my @trees = $parser->end_document
Function: Finishes a Phylogeny cycle
Returns : An array Bio::Tree::TreeI
Args : nonestart_element
Title : start_element
Usage :
Function:
Example :
Returns :
Args : $data => hashref with key 'Name'end_element
Title : end_element
Usage :
Function:
Returns : none
Args : $data => hashref with key 'Name'in_element
Title : in_element
Usage :
Function:
Example :
Returns :
Args :within_element
Title : within_element
Usage :
Function:
Example :
Returns :
Args :characters
Title : characters
Usage : $handler->characters($text);
Function: Processes characters
Returns : none
Args : text string