NAME

bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION

Convert an input mRNA/cDNA sequence into protein using translate()

-f/--frame           Specifies frame [0,1,2]

One can also specify:

-t/--terminator      Stop Codon character (defaults to '*')
-u/--unknown         Unknown Protein character (defaults to 'X')
-cds/--fullcds       Expected Full CDS (with start and Stop codon)
-throwOnError        Throw error if no Full CDS (defaults to 0)
-if/--format         Input format (defaults to FASTA/Pearson)
-of/--format         Output format (defaults to FASTA/Pearson)
-o/--output          Output Filename (defaults to STDOUT)
-i/--input           Input Filename (defaults to STDIN)
-ct/--codontable     Codon table to use (defaults to '1')

See Bio::PrimarySeq for more information on codon tables and the translate() method

AUTHOR - Jason Stajich

Email jason-at-bioperl-dot-org