/ 
BioPerl-1.007001
River stage two • 60 direct dependents • 65 total dependents
/ Bio::TreeIO::svggraph

NAME

Bio::TreeIO::svggraph - A simple output format that converts a Tree object to an SVG output

SYNOPSIS

use Bio::TreeIO;
my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
my $out = Bio::TreeIO->new(-file => '>output', -format => 'svggraph');

while( my $tree = $in->next_tree ) {
    my $svg_xml = $out->write_tree($tree);
}

DESCRIPTION

This outputs a tree as an SVG graphic using the SVG::Graph API

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHOR - Brian OConnor

Email brian.oconnor-at-excite.com

CONTRIBUTORS

Allen Day Guillaume Rousse, Guillaume-dot-Rousse-at-inria-dot-fr

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = Bio::TreeIO::svggraph->new();
Function: Builds a new Bio::TreeIO::svggraph object
Returns : Bio::TreeIO::svggraph
Args    :-width    => image width (default 1600)
         -height   => image height (default 1000)
         -margin   => margin (default 30)
         -stroke   => stroke color (default 'black')
         -stroke_width=> stroke width (default 2)
         -font_size=> font size (default '10px')
         -nomalize => undef or 'log' (default is undef)

write_tree

Title   : write_tree
Usage   : $treeio->write_tree($tree);
Function: Write a tree out to data stream in newick/phylip format
Returns : none
Args    : Bio::Tree::TreeI object

decorateRoot

Title   : _decorateRoot
Usage   : internal methods
Function:
Example :
Returns :
Args    :

next_tree

Title   : next_tree
Usage   :
Function: Sorry not possible with this format
Returns : none
Args    : none