/ 
BioPerl-1.007001
River stage two • 60 direct dependents • 65 total dependents
/ Bio::Tools::Prints

NAME

Bio::Tools::Prints - Parser for FingerPRINTScanII program

SYNOPSIS

use Bio::Tools::Prints;
my $prints_parser = Bio::Tools::Prints->new(-fh =>$filehandle );
while( my $prints_feat = $prints_parser->next_result ) {
      push @prints_feat, $prints_feat;
}

DESCRIPTION

PRINTScan II is a PRINTS fingerprint identification algorithm.
Copyright (C) 1998,1999  Phil Scordis

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.

 bioperl-l@bioperl.org                  - General discussion
 http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:

 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Balamurugan Kumarasamy

bala@tll.org.sg
juguang@tll.org.sg

APPENDIX

The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = Bio::Tools::Prints->new(-fh=>$filehandle);
Function: Builds a new Bio::Tools::Prints object
Returns : Bio::Tools::Prints
Args    : -filename
          -fh (filehandle)

next_result

Title   : next_result
Usage   : my $feat = $prints_parser->next_result
Function: Get the next result set from parser data
Returns : L<Bio::SeqFeature::Generic>
Args    : none

create_feature

Title   : create_feature
Usage   : my $feat=$prints_parser->create_feature($feature,$seqname)
Function: creates a SeqFeature Generic object
Returns : L<Bio::SeqFeature::FeaturePair>
Args    :
Title   : print_sac
Usage   : $prints_parser->print_sac($print_sac)
Function: get/set for print_sac
Returns :
Args    :

seqname

Title   : seqname
Usage   : $prints_parser->seqname($seqname)
Function: get/set for seqname
Returns :
Args    :