NAME

Bio::Search::HSP::HSPFactory - A factory to create Bio::Search::HSP::HSPI objects

SYNOPSIS

use Bio::Search::HSP::HSPFactory;
my $factory = Bio::Search::HSP::HSPFactory->new();
my $resultobj = $factory->create(@args);

DESCRIPTION

This is a general way of hiding the object creation process so that we can dynamically change the objects that are created by the SearchIO parser depending on what format report we are parsing.

This object is for creating new HSPs.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich

Email jason-at-bioperl.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = Bio::Search::HSP::HSPFactory->new();
Function: Builds a new Bio::Search::HSP::HSPFactory object 
Returns : Bio::Search::HSP::HSPFactory
Args    :

create

Title   : create
Usage   : $factory->create(%args)
Function: Create a new L<Bio::Search::HSP::HSPI> object  
Returns : L<Bio::Search::HSP::HSPI>
Args    : hash of initialization parameters

type

Title   : type
Usage   : $factory->type('Bio::Search::HSP::GenericHSP');
Function: Get/Set the HSP creation type
Returns : string
Args    : [optional] string to set