/ 
BioPerl-1.007001
River stage two • 60 direct dependents • 65 total dependents
/ Bio::Restriction::IO::itype2

NAME

Bio::Restriction::IO::itype2 - itype2 enzyme set

SYNOPSIS

Do not use this module directly. Use it via the Bio::Restriction::IO class.

DESCRIPTION

This is tab delimited, entry per line format which is fast to process.

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing lists Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHOR

Rob Edwards, redwards@utmem.edu

CONTRIBUTORS

Heikki Lehvaslaiho, heikki-at-bioperl-dot-org Mark A. Jensen, maj-at-fortinbras-dot-us

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

read

Title   : read
Usage   : $renzs = $stream->read
Function: reads all the restrction enzymes from the stream
Returns : a Bio::Restriction::IO object
Args    : none

Internally creates a hash of enzyme information which is passed on to Bio::Restriction::Enzyme::new.

_xln_sub

Title   : _xln_sub
Function: Translates withrefm coords to Bio::Restriction coords
Args    : Bio::Restriction::Enzyme object, scalar integer (cut posn)
Note    : Used internally; pass as a coderef to the B:R::Enzyme 
          constructor

write

Title   : write
Usage   : $stream->write($renzs)
Function: writes restriction enzymes into the stream
Returns : 1 for success and 0 for error
Args    : a Bio::Restriction::Enzyme
          or a Bio::Restriction::EnzymeCollection object