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BioPerl-1.007000_005
River stage two • 60 direct dependents • 65 total dependents
/ bp_tree2pag

NAME

bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format

SYNOPSIS

bp_tree2pag -if nexus -i file.nexus > file.pag

# OR pipe in through STDIN, and use newick format instead

cat file.newick | bp_tree2pag -if newick > file.nh

# OR specify an output and input

bp_tree2pag -o file.pag -i file.newick

DESCRIPTION

Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.