NAME

bp_generate_histogram.pl -- Generate a histogram of Bio::DB::GFF features

SYNOPSIS

bp_generate_histogram.pl -d gadfly variation gene:curated

DESCRIPTION

Use this utility to generate feature density histograms from Bio::DB::GFF databases. The result is a GFF data file that is suitable for loading with load_gff.pl.

OPTIONS

The following options are recognized:

Option        Description
------        -----------

 --dsn        <dsn>       Data source (default dbi:mysql:test)
 --adaptor    <adaptor>   Schema adaptor (default dbi::mysqlopt)
 --user       <user>      Username for mysql authentication
 --pass       <password>  Password for mysql authentication
 --aggregator <list>      Comma-separated list of aggregators

BUGS

Please report them.

SEE ALSO

Bio::DB::GFF

AUTHOR

Lincoln Stein <lstein@cshl.org>

Copyright (c) 2001 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.