NAME

Bio::Tools::RepeatMasker - a parser for RepeatMasker output

SYNOPSIS

use Bio::Tools::RepeatMasker;
my $parser = Bio::Tools::RepeatMasker->new(-file => 'seq.fa.out');
while( my $result = $parser->next_result ) {
  # get some value
}

DESCRIPTION

A parser for RepeatMasker output

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHOR - Shawn Hoon

Email shawnh@fugu-sg.org

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

Title   : new
Usage   : my $obj = Bio::Tools::RepeatMasker->new();
Function: Builds a new Bio::Tools::RepeatMasker object
Returns : Bio::Tools::RepeatMasker
Args    : -fh/-file => $val, for initing input, see Bio::Root::IO

next_result

Title   : next_result
Usage   : my $r = $rpt_masker->next_result
Function: Get the next result set from parser data
Returns : Bio::SeqFeature::FeaturePair
          Feature1 is the Query coordinates and Feature2 is the Hit
Args    : none