NAME

Bio::Tools::PrositeScan - Parser for ps_scan result

SYNOPSIS

use Bio::Tools::PrositeScan;

my $factory = Bio::Tools::PrositeScan->new(
    -file => 'out.PrositeScan'
);

while(my $match = $factory->next_prediction){
    #  $match is of Bio::SeqFeature::FeaturePair
    my $q_id = $fatch->feature1->seq_id;
    my $h_id = $fatch->feature2->seq_id;
}

DESCRIPTION

This is the parser of the output of ps_scan program. It takes either a file handler or a file name, and returns a Bio::SeqFeature::FeaturePair object.

AUTHOR

Juguang Xiao, juguang@tll.org.sg

new

Title   : new
Usage   : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan');
          Bio::Tools::PrositeScan->new(-fh => \*FH);
Returns : L<Bio::Tools::PrositeScan>

next_prediction

Title   : new
Usage   : 
    while($result = $factory->next_prediction){
        ;
    }

Returns : a Bio::SeqFeature::FeaturePair object