NAME

Bio::Tools::AlignFactory - Base object for alignment factories

SYNOPSIS

You wont be using this as an object, but using a dervied class like Bio::Tools::pSW

DESCRIPTION

Holds common Alignment Factory attributes in place

CONTACT

http://bio.perl.org/ or birney@sanger.ac.uk

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

kbyte

Title     : kbyte()
Usage     : set/gets the amount of memory able to be used
Function  : 
          : $factory->kbyte(200);
          :
Returns   : 
Argument  : memory in kilobytes

report

Title     : report()
Usage     : set/gets the report boolean to issue reports or not
Function  : 
          : $factory->report(1); # reporting goes on
          :
Returns   : n/a
Argument  : 1 or 0

set_memory_and_report

Title   : set_memory_and_report
Usage   : Only used by subclasses.
Function:
Example :
Returns : 
Args    :