NAME

Bio::Tradis::Map - Perform mapping

VERSION

version 1.132140

SYNOPSIS

Takes a reference genome and indexes it. Maps given fastq files to ref.

use Bio::Tradis::Map;

my $pipeline = Bio::Tradis::Map->new(fastqfile => 'abc', reference => 'abc');
$pipeline->index_ref();
$pipeline->do_mapping();

AUTHOR

Carla Cummins <cc21@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007