NAME
reConfigTest.pl -
This program returns the shortest path length between two
CUIs (or terms) using different sources in order to test
the reConfig method in the Interface.pm moduleSYNOPSIS
This program takes in a term and returns all of its associated CUIs from two different sources
USAGE
Usage: reConfigTest.pl [OPTIONS} [CUI1|TERM1] [CUI2|TERM2]
INPUT
Required Arguments:
[CUI1|TERM1] [CUI2|TERM2]
A TERM or CUI (or some combination) from the Unified Medical Language System
Optional Arguments:
--debug
Sets the debug flag for testing
--username STRING
Username is required to access the umls database on MySql unless it was specified in the my.cnf file at installation
--password STRING
Password is required to access the umls database on MySql unless it was specified in the my.cnf file at installation
--hostname STRING
Hostname where mysql is located. DEFAULT: localhost
--socket STRING
The socket your mysql is using. DEFAULT: /tmp/mysql.sock
--database STRING
Database contain UMLS DEFAULT: umls
--realtime
This option will not create a database of the path information for all of concepts in the specified set of sources and relations in the config file but obtain the information for just the input concept
--forcerun
This option will bypass any command prompts such as asking if you would like to continue with the index creation.
--verbose
This option will print out the table information to the config directory that you specified.
--help
Displays the quick summary of program options.
--version
Displays the version information.
OUTPUT
The path(s) between the two given CUIs or terms
SYSTEM REQUIREMENTS
Perl (version 5.8.5 or better) - http://www.perl.org
AUTHOR
Bridget T. McInnes, University of MinnesotaCOPYRIGHT
Copyright (c) 2007-2009,
Bridget T. McInnes, University of Minnesota
bthomson at cs.umn.edu
Ted Pedersen, University of Minnesota Duluth
tpederse at d.umn.edu
Siddharth Patwardhan, University of Utah, Salt Lake City
sidd@cs.utah.edu
Serguei Pakhomov, University of Minnesota Twin Cities
pakh0002@umn.eduThis program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to:
The Free Software Foundation, Inc.,
59 Temple Place - Suite 330,
Boston, MA 02111-1307, USA.