NAME

generate_callable_bases.pl

SYNOPSIS

generate_callable_bases.pl [options] [file ...]

        Options:
        --help          brief help message
        --man           full documentation
        --input                 input bam file
        --output_dir    output bed files directory
        --min_cov       minimum coverage for callable bases definition (default = 10)

OPTIONS

--help

Print a brief help message and exit.

--man

Print the manual page.

--input

Input bam file.

--output_dir

Output bed files directory.

--min_cov

Minimum coverage for callable bases definition (default = 10).

DESCRIPTION

generate_callable_bases.pl

Finds callable bases of the bam file given, documented in bed file

EXAMPLE

perl generate_callable_bases.pl --input /path/to/bam --output_dir .

Vincent Huang vhuang -- Boutros Lab

The Ontario Institute for Cancer Research

Lydia Liu lliu -- Boutros Lab

The Ontario Institute for Cancer Research

ACKNOWLEDGEMENTS

Paul Boutros, PhD, PI - Boutros Lab