/ 
bioperl-1.2
/ Bio::Ontology::OntologyEngineI

NAME

OntologyEngineI - DESCRIPTION of Interface

SYNOPSIS

Give standard usage here

DESCRIPTION

Describe the interface here

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

bioperl-l@bioperl.org              - General discussion
http://bioperl.org/MailList.shtml  - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

bioperl-bugs@bioperl.org
http://bioperl.org/bioperl-bugs/

AUTHOR - Peter Dimitrov

Email dimitrov@gnf.org

Describe contact details here

CONTRIBUTORS

Additional contributors names and emails here

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

add_term

Title   : add_term
Usage   : add_term(TermI term): TermI
Function:
Example :
Returns : 
Args    :

add_relationship

Title   : add_relationship
Usage   : add_relationship(RelationshipI relationship)
 add_relatioship(TermI parent, TermI child, TermI relationship_type)
Function:
Example :
Returns : 
Args    :

get_relationships

Title   : get_relationships
Usage   : get_relationships([TermI term]): RelationshipI[]
Function:
Example :
Returns : 
Args    :

get_relationship_types

Title   : get_relationship_types
Usage   : get_relationship_types(): TermI[]
Function:
Example :
Returns :
Args    :

get_child_terms

Title   : get_child_terms
Usage   : get_child_terms(TermI term, TermI[] rel_types): TermI[]
Function:
Example :

Returns :
Args    :

get_descendant_terms

Title   : get_descendant_terms
Usage   : get_descendant_terms(TermI term, TermI[] rel_types): TermI[]
Function:
Example :
Returns : 
Args    :

get_parent_terms

Title   : get_parent_terms
Usage   : get_parent_terms(TermI term, TermI[] rel_types): TermI[]
Function:
Example :
Returns : 
Args    :

get_ancestor_terms

Title   : get_ancestor_terms
Usage   : get_ancestor_terms(TermI term, TermI[] rel_types): TermI[]
Function:
Example :
Returns : 
Args    :

get_leaf_terms

Title   : get_leaf_terms
Usage   :
Function:
Example :
Returns : 
Args    :

get_root_terms()

Title   : get_root_terms()
Usage   : get_root_terms()
Function:
Example :
Returns : 
Args    :