NAME

align2nex.pl - translate an alignment into NEXUS format using BioPerl

SYNOPSIS

align2nex.pl [options] <infile>

Output the alignment in <infile> in NEXUS format. This is dependent on BioPerl AlignIO modules. I don't know how well it will work.

-f, --format: The format of the input file. One of { bl2seq, clustalw, emboss, fasta, mase, mega, meme, msf, nexus, pfam, phylip, prodom, psi, selex, stockholm }.
-o, --outfile: The name of the output file. Defaults to out.nex.
-h, --help: Print a brief help message and exits.
--man: Print the manual page and exits.
-V, --version: Print the version information and exit.

$Id: align2nex.pl,v 1.6 2006/08/24 06:41:57 thladish Exp $

Arlin Stoltzfus (stoltzfu@umbi.umd.edu)

To install Bio::NEXUS, copy and paste the appropriate command in to your terminal.

cpanm Bio::NEXUS

perl -MCPAN -e shell
install Bio::NEXUS

For more information on module installation, please visit the detailed CPAN module installation guide.

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