NAME

Bio::NEXUS::HistoryBlock - Represents a HISTORY block of a NEXUS file

SYNOPSIS

$block_object = new Bio::NEXUS::HistoryBlock('history', $block, $verbose);

DESCRIPTION

This is a class representing a history block in NEXUS file

FEEDBACK

All feedback (bugs, feature enhancements, etc.) are greatly appreciated.

AUTHORS

Chengzhi Liang (liangc@umbi.umd.edu)
Justin Reese
Tom Hladish (tjhladish at yahoo)

VERSION

$Revision: 1.28 $

METHODS

new

Title   : new
Usage   : block_object = new Bio::NEXUS::HistoryBlock($block_type, $commands, $verbose);
Function: Creates a new Bio::NEXUS::HistoryBlock object
Returns : Bio::NEXUS::HistoryBlock object
Args    : type (string), the commands/comments to parse (array ref), and a verbose flag (0 or 1; optional)
Comments: 

equals

Name    : equals
Usage   : $block->equals($another);
Function: compare if two Block objects are equal
Returns : boolean 
Args    : a Block object

rename_otus

Name    : rename_otus
Usage   : $nexus->rename_otus(\%translation);
Function: rename all OTUs 
Returns : a new nexus object with new OTU names
Args    : a ref to hash based on OTU name pairs

add_otu_clone

Title   : add_otu_clone
Usage   : ...
Function: ...
Returns : ...
Args    : ...