NAME

nex2text_tree.pl - Trees as strings

SYNOPSIS

nex2text_tree.pl [options] [file ...]
nex2text_tree.pl --tree_width 100 --otu_spacing 4 --demo
nex2text_tree.pl -i input.nex -o text_string_tree.out --tree_width 100 --otu_spacing 4

OPTIONS

-d or --demo       	            Prints out a default tree to the STDOUT
-h or --help      	            Brief help message about the options
-m or --manual     	            Full documentation
-i or --input <file_name>       Specify input NEXUS file 
-o or --output <file_name>      Specify output file (default: STDOUT)
-w or --tree_width 30           Total width of the output tree string (default = 30) [Integer]
-s or --otu_spacing 4           Vertical spacing betweein OTUs (default value = 4) [Integer]
-V or --version                 Print version information and quit
--verbose                       The parameters are also printed along with the tree.
-c or --cladogram  normal       The parameters are also printed along with the tree. (options: 'normal' or 'accelarated')

DESCRIPTION

B<nex2text_tree.pl> prgram will read the given input NEXUS file and converts the newick tree in the TreesBlock 
as string.

AUTHOR(S)

Vivek Gopalan (gopalan_vivek@yahoo.com)	   

METHODS