NAME

TermIonSeries - Perl class to represent N-/C-terminal fragment ion series.

SYNOPSIS

use InSilicoSpectro::InSilico::TermIonSeries

DESCRIPTION

This class inherits from IonSeries and just adds two new attributes for keeping track of the orientation and the series (a,b,c,x,y,z).

ATTRIBUTES

series

The generic series for these ions, i.e. the generic series for y++ and y-NH3 is y.

terminus

Equals 'C' or 'N';

METHODS

new([%h|$TermIonSeries])

Constructor. %h is a hash of attribute=>value pairs, $TermIonSeries is a InSilicoSpectro::InSilico::TermIonSeries object, from which the attributes are copied.

series([$s])

Accessor/modifier of the attribute series.

terminus([$s])

Accessor/modifier of the attribute terminus.

EXAMPLES

See t/InSilico/testCalcFragOOP.pl.

AUTHORS

Jacques Colinge, Upper Austria University of Applied Science at Hagenberg