NAME
indexXml.pl
DESCRIPTION
Builds a xml index for large xml files. From a source.xml file, extract info as requested in a indexmaker.xml and write an index.xml
SYNOPSIS
See perldoc InSilicoSpectro::Utils::XML::SaxIndexMaker for the indexmaker and output formats.
See the lib/Phenyx/Utils/SaxIndexMaker/test directory for examples
ARGUMENTS
- -src=xmlfile
-
The file to be indexed (typically a large file, too large to be handled by DOM technology).
If this file is gziped, it will be gunziped temporarly in the defaut temp directory
- -indexmaker=xmlfile
-
The file with the description of what is to be index from the source file.
OPTIONS
Example
./prepareDb.pl --src=dat:/tmp/human.seq -db=SwissProtHuman --xtraconfigtags="phenyx.databases:/tmp;phenyx.users.default=/tmp"
COPYRIGHT
Copyright (C) 2004-2005 Geneva Bioinformatics www.genebio.com
This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
AUTHORS
Alexandre Masselot, www.genebio.com