NAME
InSilicoSpectro::InSilico::IsoelPoint - A class for peptide isoelectric point (pI) prediction
SYNOPSIS
use InSilicoSpectro::InSilico::IsoelPoint;
# create a isoelectric point predictor
my $pi = InSilicoSpectro::InSilico::IsoelPoint->new;
# predict isoelectric point for a peptide
$pi->predict( peptide=>'ACFGDMKWVTFISLLRPLLFSSAYSRGVFRRDTHKSEIAHRFKDLGE' );
# calibrate the predictor
$pi->calibrate( data=>{calseqs=>\@calseqs,caltimes=>\@caltimes,calmodifs=>\@calmodifs},calibrator=>$ec );DESCRIPTION
InSilicoSpectro::InSilico::IsoelPoint is a class for predicting the isoelectric point of peptides. It gives also a method for calibration of the predictor.
METHODS
my $pi=InSilicoSpectro::InSilico::IsoelPoint->new($h)
$h contains a hash with parameters.
$pi->predict($point)
Predict the isoelectric point.
$pi->calibrate(%h)
Calibrate the predictor.
$pi->write_cal( calfile=>$file );
Save current calibrator.
$pi->read_cal ( calfile=>$file );
Retrieve a previously saved calibrator.
$pi->set($name, $val)
Set an instance parameter.
$ip->get($name)
Get an instance parameter.
FUNCTIONS
getAuthorList($method)
Returns a pointer to an array of available authors param set for a given method (such as as 'iterative')
EXAMPLES
see InSilicoSpectro/t/InSilico/testIsoelPoint.pl script
SEE ALSO
InSilicoSpectro::InSilico::ExpCalibrator
InSilicoSpectro::InSilico::RetentionTimer
COPYRIGHT
Copyright (C) 2004-2005 Geneva Bioinformatics www.genebio.com
This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version.
This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
AUTHORS
Pablo Carbonell, Alexandre Masselot, www.genebio.com