NAME

Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs - Update the names of the contigs so that the assembly can be submitted to a database like EMBL

VERSION

version 1.160490

SYNOPSIS

Update the names of the contigs so that the assembly can be submitted to a database like EMBL

use Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs;

my $obj = Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs->new(
  input_assembly => 'contigs.fa',
  base_contig_name => 'ABC'
)->run();

METHODS

run

Rename the contigs

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007