/ 
SmotifTF-0.09
River stage zero No dependents
/ RunModeller

NAME

RunModeller

VERSION

Version 0.01

SYNOPSIS

This module is the last step of the modeling algorithm. It runs modeller for the top 5 scoring models obtained from enumeration to fix the sidechains and the stereochemistry.

use RunModeller;

get_model($pdbcode);

EXPORT

get_model

get_model

Subroutine to run modeller. 
Input: 4-letter pdbcode, flag for whether native structure is available (0=No, 1=yes). 
Output files: Top 5 models in the pdb directory with filenames Model.1.pdb, Model.2.pdb, 
              Model.3.pdb, Model.4.pdb, Model.5.pdb
On screen output: Information on completed models.

AUTHORS

Fiserlab Members , <andras at fiserlab.org>

BUGS

Please report any bugs or feature requests to bug-. at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=..

SUPPORT

You can find documentation for this module with the perldoc command.

perldoc RunModeller

LICENSE AND COPYRIGHT

Copyright 2015 Fiserlab Members .

This program is free software; you can redistribute it and/or modify it under the terms of the the Artistic License (2.0). You may obtain a copy of the full license at:

http://www.perlfoundation.org/artistic_license_2_0

Any use, modification, and distribution of the Standard or Modified Versions is governed by this Artistic License. By using, modifying or distributing the Package, you accept this license. Do not use, modify, or distribute the Package, if you do not accept this license.

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This license does not grant you the right to use any trademark, service mark, tradename, or logo of the Copyright Holder.

This license includes the non-exclusive, worldwide, free-of-charge patent license to make, have made, use, offer to sell, sell, import and otherwise transfer the Package with respect to any patent claims licensable by the Copyright Holder that are necessarily infringed by the Package. If you institute patent litigation (including a cross-claim or counterclaim) against any party alleging that the Package constitutes direct or contributory patent infringement, then this Artistic License to you shall terminate on the date that such litigation is filed.

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