LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

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NAME

Bio::EnsEMBL::Mapper::Unit - One side of a map pair

SYNOPSIS

DESCRIPTION

Two regions mapped between different coordinate systems are each represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a Bio::EnsEMBL::Mapper::Pair.

METHODS

id

  Arg  1      int|char $id
	      the id of the object (e.g. seq_region_name) which is mapped
  Function    accessor method
  Returntype  int|char
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Unit
  Status      Stable

start

  Arg  1      int $start
	      the start coordinate of the mapped
	      region which this object represents
  Function    accessor method
  Returntype  int
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Unit
  Status      Stable

end

  Arg  1      int $end
	      the end coordinate of the mapped
	      region which this object represents
  Function    accessor method
  Returntype  int
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Unit
  Status      Stable