LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

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NAME

Bio::EnsEMBL::Map::MapLocation

SYNOPSIS

DESCRIPTION

Represents a location on a genetic map, yac map, radition hybrid map, etc.

METHODS

new

  Arg [1]    : (optional) string $name
  Arg [2]    : (optional) string $map_name
  Arg [3]    : (optional) string $chromosome_name
  Arg [4]    : (optional) string $position
  Arg [5]    : (optional) float $lod_score
  Example    : $map_location = Bio::EnsEMBL::Map::MapLocation->
                 new('DS1234',
                     'genethon',
                     'X',
                     '12.39',
                     50.12);
  Description: Creates a new MapLocation
  Returntype : Bio::EnsEMBL::Map::MapLocation
  Exceptions : none
  Caller     : general
  Status     : stable

map_name

  Arg [1]    : string $map_name
  Example    : $map_name = $map_location->map_name;
  Description: Getter/Setter for the map name
  Returntype : string
  Exceptions : none
  Caller     : general
  Status     : stable

name

  Arg [1]    : (optional) string $name
  Example    : $name = $map_location->name;
  Description: A name associated with the marker at this position.  For
               example if this is a genethon map location the name will be
               the synonym of source genethon.
  Returntype : string
  Exceptions : none
  Caller     : general
  Status     : stable

chromosome_name

  Arg [1]    : (optional) string $chromosome_name
  Example    : $chr_name = $map_location->chromosome_name;
               $map_location->chromosome_name('X');
  Description: The name of the chromosome associated with this map location
  Returntype : string
  Exceptions : none
  Caller     : general
  Status     : stable

position

  Arg [1]    : (optional) string $position
  Example    : $pos = $map_location->position;
  Description: Getter/Setter for the position of this map location
  Returntype : string
  Exceptions : none
  Caller     : general
  Status     : stable

lod_score

  Arg [1]    : (optional) float $lod
  Example    : $lod = $map_location->lod_score;
  Description: Getter/Setter for lod score of this map location
  Returntype : float
  Exceptions : none
  Caller     : general
  Status     : stable