NAME

diffReps::SlideWindow - class to deal with a sliding window.

diffReps::ChromaModSite - class to deal with chromatin modification site, inherited from SlideWindow.

diffReps::RegionList - class for a list of modification regions.

SYNOPSIS

my $slideWindow = new diffReps::SlideWindow;
my $site = new diffReps::ChromaModSite;
my $regList = new diffReps::RegionList;

DESCRIPTION

In order to perform differential analysis for ChIP-seq data, we need to define classes and methods that can retrieve short read counts for a designated window; perform statistics and book-keep important information.

EXPORT

None. This is OO designed.

SEE ALSO

diffReps::DiffRes

Mailing list: https://groups.google.com/forum/#!forum/diffreps-discuss

Web site: https://code.google.com/p/diffreps/

AUTHOR

Li Shen, <shenli.sam@gmail.com>

COPYRIGHT AND LICENSE

Copyright (C) 2010-2013 by Li Shen

diffReps goes under GNU GPL v3: http://www.gnu.org/licenses/gpl.html