NAME

Genome - pipelines, tools, and data managment for genomics

SYNOPSIS

use Genome;

# modules in the Genome namespace will now dynamically load

@i = Genome::InstrumentData::Illumina->get(...);
$m = Genome::Model::SomaticVariation->create(...);

DESCRIPTION

This is the base namespace module for the Genome software tree.

That tree has several primary components:

Genome::Model:         a data modeling pipeline management system for genomics 

Genome::Model::Tools   a tree of >1000 tools and tool wrappers for genomics

Genome::*              a variety of sample tracking classes with an RDBMS back-end

Only the tools system is currently released.

See genome for a complete inventory of all tool packages, and for command-line access to those tools.

AUTHORS

This software is developed by the analysis and engineering teams at 
The Genome Center at Washington Univiersity in St. Louis, with funding from 
the National Human Genome Research Institute.  Richard K. Wilson, P.I.

Scott Abbott
Travis Abbott
Edward Belter
Paul Bender
Anthony Brummett
Todd C. Carter
Matthew Callaway
C.J. Carey
Lynn Carmichael
Ken Chen
Lei Chen
Eric Clark
Kevin Crouse
Indraniel Das
Nathan Dees
Eric deMello
Brian Derickson
Alice Diec
David Dooling
Feiyu Du
Adam Dukes
James Eldred
Xian Fan
Ian Ferguson
Chris Harris
Amy Hawkins
Todd Hepler
Xin Hong
Shunfang Hou
Jasreet Hundal
Erik Hvatum
Mark Johnson
Krisha-Latha Kanchi
Cyriac Kandoth
Phil Kimmey
Michael Kiwala
Daniel Koboldt
Karthik Kota
Kim Kyung
David Larson
Sai Lek
Shawn Leonard
Shin Leong
Ling Lin
Justin Lolofie
Robert Long
Charles Lu
John Martin
Josh McMichael
Rick Meyer
Thomas Mooney
William Nash
Nathan Nutter
Ben Oberkfell
John Osborne
Josh Peck
Jerome Peirick
Craig Pohl
Ryan Richt
Noorus Sahar Abubucker
Gabriel Sanderson
William Schierding
Jon Schindler
William Schroeder
Christopher Schuster
Xiaoqi Shi
Scott Smith
Sasi Suruliraj
Kenneth Swanson
Jason Walker
John Wallis
Jim Weible
Mike Wendl
Todd Wylie

LICENSE

Copyright (C) 2007-2011 Washington University in St. Louis.

It is released under the Lesser GNU Public License (LGPL) version 3. See the associated LICENSE file in this distribution.

BUGS

For defects with any software in the genome namespace, contact genome-dev ~at~ genome.wustl.edu.