/ 
Bioinfo-0.1.15
River stage zero No dependents
/ Bioinfo::App::Cmd::Blast::Cmd::ParseXML

NAME

Bioinfo::App::Cmd::Blast::Cmd::ParseXML - parse XML file of blast+(with outfmt=5) into tabular format

VERSION

version 0.1.15

SYNOPSIS

use Bioinfo::App::Cmd::Blast::Cmd::ParseXML;
Bioinfo::App::Cmd::Blast::Cmd::ParseXML->new_with_cmd;
...

DESCRIPTION

parse XML file of blast+(with outfmt=5) into tabular format. In addition, the definition of a sequence is added to the last column of each row, as which is usually important to our job.

ATTRIBUTES

input

a file of xml format generated by blast+

output

the outfile name of tabular format(similar to the result of blast+ with parameter outfmt=6.

METHODS

execute

_iteration

the iteration routine used by Twig;

AUTHOR

Yan Xueqing <yanxueqing621@163.com>

COPYRIGHT AND LICENSE

This software is copyright (c) 2017 by Yan Xueqing.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.