NAME

Bio::Roary::IterativeCdhit - Run CDhit iteratively with reducing thresholds, removing full clusters each time

VERSION

version 3.13.0

SYNOPSIS

Run CDhit iteratively with reducing thresholds, removing full clusters each time use Bio::Roary::IterativeCdhit;

my $obj = Bio::Roary::IterativeCdhit->new(
  output_cd_hit_filename   => 'output_cd_hit_filename.fa',
  output_combined_filename => 'output_combined_filename.fa',
  number_of_input_files     => 5,
  output_filtered_clustered_fasta= > 'output_filtered_clustered_fasta.fa',
);
$obj->run;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007