NAME
Bio::FastParsers::Hmmer::Table - Front-end class for tabular HMMER parser
VERSION
version 0.221230
SYNOPSIS
use aliased 'Bio::FastParsers::Hmmer::Table';
# open and parse HMMER report in tabular format
my $infile = 'test/hmmer.tblout';
my $report = Table->new( file => $infile );
# loop through hits
while (my $hit = $hit->next_hit) {
my ($target_name, $evalue) = ($hit->target_name, $hit->evalue);
# ...
}
DESCRIPTION
# TODO
ATTRIBUTES
file
Path to HMMER report file in tabular format (--tblout) to be parsed
METHODS
next_hit
Shifts the first Hit of the report off and returns it, shortening the report by 1 and moving everything down. If there are no more Hits in the report, returns undef
.
# $report is a Bio::FastParsers::Hmmer::Table
while (my $hit = $report->next_hit) {
# process $hit
# ...
}
This method does not accept any arguments.
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
CONTRIBUTOR
Arnaud DI FRANCO <arnaud.difranco@gmail.com>
COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.