NAME

Bio::DB::GFF::Aggregator::ucsc_softberry -- UCSC softberry aggregator

SYNOPSIS

  use Bio::DB::GFF;

  # Open the sequence database
  my $db      = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
                                   -dsn     => 'dbi:mysql:elegans42',
				   -aggregator => ['transcript','clone'],
				 );

 -------------------------------------------------
 Aggregator method: softberry
 Main method:       transcript
 Sub methods:       softberryGene
 -------------------------------------------------

DESCRIPTION

Bio::DB::GFF::Aggregator::transcript

method

Title   : method
Usage   : $aggregator->method
Function: return the method for the composite object
Returns : the string "softberry"
Args    : none
Status  : Public

part_names

Title   : part_names
Usage   : $aggregator->part_names
Function: return the methods for the sub-parts
Returns : empty list
Args    : none
Status  : Public

main_name

Title   : main_name
Usage   : $aggregator->main_name
Function: return the method for the main component
Returns : the string "transcript:softberryGene"
Args    : none
Status  : Public

BUGS

None reported.

SEE ALSO

Bio::DB::GFF, Bio::DB::GFF::Aggregator

AUTHOR

Allen Day <allenday@ucla.edu>.

Copyright (c) 2002 Allen Day, University of California, Los Angeles.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.