NAME
Bio::BioStudio::BLAST
VERSION
Version 2.10
DESCRIPTION
BioStudio functions
AUTHOR
Sarah Richardson <smrichardson@lbl.gov>.
Functions
_get_species_database
_BLAST_name
_path_to_BLAST_database
_path_to_BLAST_index
_fetch_BLAST_index
_make_BLAST_index
_verify_BLAST_index
_make_species_database
_blastn_short
Pass it a ~30mer sequence and a BLAST factory, it will return the number of plausible hits it makes
COPYRIGHT AND LICENSE
Copyright (c) 2015, BioStudio developers All rights reserved.
Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
* Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
* Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
* The names of Johns Hopkins, the Joint Genome Institute, the Joint BioEnergy Institute, the Lawrence Berkeley National Laboratory, the Department of Energy, and the BioStudio developers may not be used to endorse or promote products derived from this software without specific prior written permission.
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