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Bio-AutomatedAnnotation-1.182770
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/ Bio::AutomatedAnnotation::GeneNameOccurances

NAME

Bio::AutomatedAnnotation::GeneNameOccurances - Parse the gene names from multiple GFF files and provide a matrix of matches.

VERSION

version 1.182770

SYNOPSIS

Parse the gene names from multiple GFF files and provide a matrix of matches. use Bio::AutomatedAnnotation::GeneNameOccurances;

my $obj = Bio::AutomatedAnnotation::GeneNameOccurances->new(
  gff_files   => ['abc.gff','efg.gff','hij.gff']
);
my %all_gene_names = %{$obj->all_gene_names};

METHODS

all_gene_names

Returns a HashRef where the keys are all observed gene names and the values are the frequency of occurance.

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

The GNU General Public License, Version 3, June 2007