NAME
Bio::AssemblyImprovement::Abacas::Iterative - Iteratively run abacas to order contigs
VERSION
version 1.160490
SYNOPSIS
Iteratively run abacas to order contigs.
use Bio::AssemblyImprovement::Abacas::Iterative;
my $iterative_contig_ordering = Bio::AssemblyImprovement::Abacas::Iterative->new(
reference => 'reference.fa'
input_assembly => 'contigs.fa'
abacas_exec => 'abacas.pl'
)->run();
METHODS
run
Run abacas.
SEE ALSO
AUTHOR
Andrew J. Page <ap13@sanger.ac.uk>
COPYRIGHT AND LICENSE
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007