NAME

App::Mimosa - Miniature Model Organism Sequence Aligner

SYNOPSIS

DEPLOYING

For full details on the deploy options:

perldoc script/mimosa_deploy.pl

To deploy a Mimosa database:

perl script/mimosa_deploy.pl

RUNNING

For full details on the server options:

perldoc script/mimosa_server.pl

To start Mimosa on port 8888:

perl script/mimosa_server.pl -p 8888

To start Mimosa on the default port (3000):

perl script/mimosa_server.pl

You should see something like:

You can connect to your server at http://localhost:3000

Now you can go to http://localhost:3000 and try Mimosa!

DEPENDENCIES

Mimosa has some non-Perl dependencies. Most notably, the NCBI BLAST command-line suite of programs. These are detected by attempting to execute

fastacmd

If it does not exist, then Mimosa will currently not work at all. Future versions of Mimosa may detect different alignment programs such as BWA.

The above command is also necessary to run the Mimosa test suite.

SEE ALSO

App::Mimosa::Controller::Root, Catalyst

AUTHORS

Jonathan "Duke" Leto <jonathan@leto.net>, Rob Buels

LICENSE

This library is free software. You can redistribute it and/or modify it under the same terms as Perl itself.