NAME

App::Dazz - Daligner-based UniTig utils

SYNOPSIS

dazz <command> [-?h] [long options...]
        -? -h --help  show help

Available commands:

   commands: list the application's commands
       help: display a command's help screen

  contained: discard contained unitigs
      cover: trusted regions in the first file covered by the second
   dazzname: rename FASTA reads for dazz_db
      group: group anchors by long reads
     layout: layout anchors within a group
      merge: merge overlapped unitigs
     orient: orient overlapped sequences to the same strand
    overlap: detect overlaps by daligner
   overlap2: detect overlaps between two (large) files by daligner
  show2ovlp: LAshow outputs to overlaps

Run dazz help command-name for usage information.

DESCRIPTION

App::Dazz comprises some Daligner-based UniTig utils

INSTALLATION

brew install brewsci/science/poa
brew install wang-q/tap/faops
brew install wang-q/tap/dazz_db@20201008
brew install wang-q/tap/daligner@20201008
brew install wang-q/tap/intspan

cpanm --installdeps https://github.com/wang-q/App-Dazz/archive/0.1.0.tar.gz
# cpanm --installdeps --verbose --mirror-only --mirror http://mirrors.ustc.edu.cn/CPAN/ https://github.com/wang-q/App-Dazz.git
cpanm -nq https://github.com/wang-q/App-Dazz/archive/0.1.0.tar.gz
# cpanm -nq https://github.com/wang-q/App-Dazz.git

AUTHOR

Qiang Wang <wang-q@outlook.com>

LICENSE

This software is copyright (c) 2017 by Qiang Wang.

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.