NAME

go2csv.pl - Generates an CSV-formatted file from a Gene Ontology file (in OBO format).

DESCRIPTION

Generates an CSV-formatted file from a Gene Ontology file (in OBO format). This script is typically used when a flat version of GO is needed for further processing of specific entities (e.g. IDs, names)

Multiple items belonging to the same category (e.g. synonyms) are separated by a '|'.

The following tags are exported (in that order):

 - term ID
 - term name
 - namespace (biological_process, molecular_function, cellular_component)
 - alt_id
 - definition
 - comment
 - synonym(s)
 - xref(s)
 - is_a (parents)
 - disjoint_from
 - relationship (parents)

You can download GO from: http://geneontology.org/page/download-ontology

AUTHOR

Erick Antezana, <erick.antezana -@- gmail.com>

COPYRIGHT AND LICENSE

Copyright (c) 2006-2015 by Erick Antezana. All rights reserved.

This script is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.8.7 or, at your option, any later version of Perl 5 you may have available.