Changes for version 1.7.3 - 2018-07-01
- Bio::Installer::PAML has been removed. Not only did it no longer work, it was also unsecure. Either install PAML via your system package manager, or download it from upstream, currently at http://abacus.gene.ucl.ac.uk/software/paml.html
- Check for the presence of paml programs now happens during build instead of during the test phase. This avoids failure reports from CPAN Testers.
- Fixed reading of results for at least codeml and yno00 in cases where next_result was previously returning undef. May be specific to PAML version 4.8 and 4.9 (current PAML version).
Documentation
calculate pairwise Ka,Ks for a set of sequences
Modules
Parses output from the PAML programs codeml, baseml, basemlg, codemlsites and yn00
Parses output from the PAML program codeml
A container for NSSite Model Result from PAML
A PAML result set object
Wrapper aroud the PAML program baseml
Wrapper aroud the PAML program codeml
Wrapper aroud the PAML program evolver
Wrapper aroud the PAML program yn00