NAME

tab2mapper.pl - Build an id mapper from a tabular file giving annotation strings

VERSION

version 0.242020

USAGE

tab2mapper.pl <infiles> [optional arguments]

REQUIRED ARGUMENTS

<infiles>

Path to input tabular (TSV) files [repeatable argument].

OPTIONAL ARGUMENTS

--col[umn]=<n>

Column number providing the string to be used as the family [default: 1]. The first column (at index 0) is the id and thus cannot be used as the family.

--gi2taxid=<file>

Optional GI-to-taxid IDM to be used to expand GIs to modern MUST ids [default: none]. This option requires a local mirror of the NCBI Taxonomy database.

--taxdir=<dir>

Path to local mirror of the NCBI Taxonomy database.

--version

--usage

--help

--man

Print the usual program information

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

CONTRIBUTOR

Loic MEUNIER <loic.meunier@doct.uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.