NAME
inst-qual-filter.pl - Discard low-quality nt seqs in FASTA files (optimized)
VERSION
version 0.242020
USAGE
inst-qual-filter.pl <infiles> --out=<suffix> [optional arguments]
REQUIRED ARGUMENTS
- <infiles>
-
Path to input FASTA files [repeatable argument].
- --out[-suffix]=<suffix>
-
Suffix to append to infile basenames for deriving outfile names.
OPTIONAL ARGUMENTS
- --filter-out=<file>
-
Path to FASTA outfile collecting unpure sequences that have been filtered out [default: none].
- --min[-purity]=<n>
-
Fraction (between 0 and 1) of pure DNA character states (ACGT) required by a sequence for it to be retained [default: 1]. All other states (including ambiguous, missing and gap-like character states) are considered as non-pure.
- --version
- --usage
- --help
- --man
-
Print the usual program information
AUTHOR
Denis BAURAIN <denis.baurain@uliege.be>
CONTRIBUTOR
Valerian LUPO <valerian.lupo@doct.uliege.be>
COPYRIGHT AND LICENSE
This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.