LICENSE

Copyright [1999-2015] Wellcome Trust Sanger Institute and the EMBL-European Bioinformatics Institute Copyright [2016-2024] EMBL-European Bioinformatics Institute

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

     http://www.apache.org/licenses/LICENSE-2.0

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NAME =head1 SYNOPSIS =head1 DESCRIPTION =head1 METHODS

check_CDS_start_end_remarks

   Args       : B::E::Transcript
   Example    : my $results = $support->check_CDS_end_remarks($transcript)
   Description: identifies incorrect 'CDS end...' transcript remarks in a
                otter-derived Vega database
   Returntype : hashref

check_CDS_start_end_remarks_loutre

   Args       : B::E::Transcript
   Example    : my $results = $support->check_CDS_end_remarks($transcript)
   Description: identifies incorrect 'CDS end...' transcript attribs in a loutre
                of a loutre-derived Vega database.
   Returntype : hashref

get_havana_seleno_comments

   Args       : none
   Example    : my $results = $support->get_havana_seleno_comments
   Description: parses the HEREDOC containing Havana comments in this module
   Returntype : hashref