TSIBLEY / App-RecordStream-Bio-0.17 / Changes 
Revision history for App-RecordStream-Bio

0.17  2015-07-26 17:01:43 PDT
    - Mention fromsam in main package documentation

0.16  2015-07-23 10:52:49 PDT
    - New command fromsam for parsing next-gen sequencing SAM files

0.15  2015-04-19 21:19:03 PDT
    - Provide a fatpacked build suitable for use by the fatpacked version of
      recs (via the custom site mechanism).  See the installation documentation
      for details!

0.14  2015-04-07 21:11:28 PDT
    - Remove dependency on BioPerl via Bio::Seq and Bio::SeqIO

0.13  2014-06-26 14:35:42 PDT
    - Avoid test hangs when prerequisites are not installed.  Thanks to
      Alexandr Ciornii for the heads up.

0.12  2014-06-24 16:48:48 PDT
    - Allow a special key name "NONE" to disable the default keys for id,
      description, and sequence

0.11  2014-06-09 13:14:25 PDT
    - Declare more test dependencies
    - Fix t/fromfasta.t on Win32 due to broken assumptions about temp filenames

0.10  2014-06-04 17:24:18 PDT
    - Declare dependency on BioPerl

0.09  2014-06-04 16:18:36 PDT
    - recs-tofasta: Avoid extra blank lines after sequences without any bases
    - Comprehensive tests for fromfasta and tofasta

0.08  2014-05-27 15:48:45 PDT
    - recs-fromfasta: Strip leading/trailing spaces from sequence names

0.07  2014-05-01 17:12:33 PDT
    - Bug fix: recs-fromfasta with --filename-key produced incorrect results
      for the last sequence in a file when using multiple input files.

0.06  2014-04-08 18:06:48 PDT
    - Add a --passthru option to recs-tofasta to skip nucleotide formatting

0.05  2014-03-31 12:25:47 PDT
    - Correct minimum Perl version to 5.10 to support \h

0.04  2014-03-28 15:11:57 PDT
    - Added --width N and --oneline options for recs-tofasta to control
      formatting

0.03  2014-03-28 10:59:11 PDT
    - Added example of recs-tofasta to primary dist doc

0.02  2014-03-28 10:55:29 PDT
    - BACKWARDS INCOMPATIBLE CHANGE: recs-fromfasta now splits the sequence
      name into id and description on the first space.  If you were previously
      using the "id" key, you'll want to start using the "name" key.  I doubt
      anyone is using this but me, though. :)

    - Added recs-tofasta for a quick way to get fasta back out after munging,
      filtering, etc.

0.01  2014-03-25 17:53:25 PDT
    - Initial release