Changelog for Bio::MAGETAB
--------------------------
1.23 Bio::MAGETAB-1.23.tar.gz Several important bug fixes provided by Anna Farne.
1.22 Bio::MAGETAB-1.22.tar.gz Another attempt to solve the error reporting problem,
newly reintroduced by the loss of previously-documented
functions from Parse::RecDescent (see below). Improved
error message formatting.
1.21 Bio::MAGETAB-1.21.tar.gz Fixed redirection of Parse::RecDescent error reporting to
use the now-documented mechanisms for doing so.
1.20 Bio::MAGETAB-1.20.tar.gz Added the option to link from ParameterValue to
ControlledTerm as per June 2009 v1.1 MAGE-TAB
specification.
Default search path for SDRF/ADF/DataMatrix switched
from current working directory to IDF directory.
Tests added for Bio::MAGETAB::Util::Reader class.
Possible fix for URI test errors when running on MSWin32.
1.13 Bio::MAGETAB-1.13.tar.gz Fixed minor FileHandle type coercion bug which led to an
unsightly verbose warning in Moose::Meta::Attribute.
1.12 Bio::MAGETAB-1.12.tar.gz Migrated from the deprecated Moose::Policy module to using
MooseX::FollowPBP.
1.11 Bio::MAGETAB-1.11.tar.gz Minor fixes to IDF and SDRF export to comply with a stricter
interpretation of the MAGE-TAB specification.
1.10 Bio::MAGETAB-1.10.tar.gz Added export_version attribute to the Writer classes to
support export of either MAGE-TAB v1.0 or MAGE-TAB v1.1.
Corrected the behaviour of the ADF Writer class when
exporting [mapping] sections.
1.00 Bio::MAGETAB-1.00.tar.gz Bug fix for export of IDF containing no multi-value
fields. Minor POD fixes.
0.99 Bio::MAGETAB-0.99.tar.gz Added support for IDF "MAGE-TAB Version" tag. Now
compliant with the second draft of the MAGE-TAB
v1.1 specification document.
0.98 Bio::MAGETAB-0.98.tar.gz Minor fixes to enable Bio::MAGETAB::Types to work
with the most recent Moose and MooseX::Types modules.
0.97 Bio::MAGETAB-0.97.tar.gz Merged magetab and magetab-util packages together for
convenience (see below for old Bio::MAGETAB::Util
changelog).
Minor bug fixes.
New class to automate fixes to ArrayExpress MAGE-TAB
documents.
0.96 Bio::MAGETAB-0.96.tar.gz Made LabeledExtract->label attribute optional. This
better agrees with the MAGE-TAB specification, even
if it doesn't make much sense in reality. This
change makes SDRF parsing slightly simpler.
0.95 Bio::MAGETAB-0.95.tar.gz Added BaseClass to the MagicDraw UML model document.
Renamed Feature blockColumn and column attributes
to blockCol and col respectively; this avoids
naming conflicts in some ORM implementations.
Renamed all "type" attributes, similarly to
avoid conflicts.
Converted Source providers and ProtocolApplication
performers to fully-fledged Contact objects.
Relaxed requirement for measurement on ParameterValue.
Added POD coverage tests.
0.91 Bio::MAGETAB-0.91.tar.gz Added class documentation (POD).
0.9 Bio::MAGETAB-0.9.tar.gz Initial public release; API almost finalised.
Changelog for Bio::MAGETAB::Util, prior to merging with Bio::MAGETAB
--------------------------------------------------------------------
0.4 Bio-MAGETAB-Util-0.4.tar.gz Added ADF, IDF and SDRF export
functions.
Improved GraphViz visualisation API.
Minor parser bug fixes.
0.31 Bio-MAGETAB-Util-0.31.tar.gz Various bug fixes based on tests
with real-world IDFs and SDRFs.
Improved object identity heuristics.
Full MySQL database schema and
unloader script.
0.3 Bio-MAGETAB-Util-0.3.tar.gz Initial public release