0.211420 2021-05-22 22:08:56+02:00 Europe/Brussels
- Addition
- Extended the parser code for handling antiSMASH 5.1.1 report format
0.201670 2020-06-15 15:04:33+02:00 Europe/Brussels
- Fixes
- bin::export_bgc_sql_tables: fixed the redundancy of IDs for modules extracted from antiSMASH v5.1 reports and shared between several gene clusters
- Parser: fixed the absence of value for the size of modules extracted from antiSMASH v5.1 reports
0.200700 2020-03-10 20:49:48+01:00 Europe/Brussels
- Changes
- Roles::Modulable: improved the module delineation algorithm
0.200290 2020-01-29 16:10:33+01:00 Europe/Brussels
- Addition
- Roles::Modulable::Component: added a new class for handling the old module delineation algorithm
- Changes
- Roles::Modulable: implemented a new algorithm for the module delineation
- Roles::Domainable: modified symbol and class regexes for handling antiSMASH v5.1 nomenclature
- binaries: changed default value 'selection' to 'substrate-selection' for --module-delineation option
- Fixes
- bin::export_bgc_sql_tables: fixed a bug in the output writing occuring when performing consecutive analyses
- bin::extract_bgc_sequences: updated the calling of module coordinates
0.200150 2020-01-15 22:07:36+01:00 Europe/Brussels
- Additions
- Parser & Roles: implemented the extraction of antiSMASH v5.1 modules
0.193230 2019-11-19 09:39:59+01:00 Europe/Brussels
- Additions
- Added module delineation option in bin/ scripts
0.193080 2019-11-04 17:56:41+01:00 Europe/Brussels
- Additions
- Added example_data/, an example dataset repository
- export_bgc_sql_tables.pl: added dna_coordinates, dna_begin and dna_end columns in Clusters table
- Changes
- draw_bgc_maps.pl: changed the color of gene blocks (gray instead of red).
- Fixes
- Parser: added a fix for domain duplicates occuring in regions.js files
0.192560 2019-09-13 16:32:18+02:00 Europe/Brussels
- Fixes
- bin::export_bgc_sql_tables: fixed key link between Domains_plus and Sequences tables
0.192540 2019-09-11 10:56:03+02:00 Europe/Brussels
- Fixes
- Roles::Fillable/Refiner::GenePlus: activated 'from seq' mode for generating exploratory Domains objects
- bin::export_bgc_sql_tables: fixed Domains_explus table export
0.192240 2019-08-12 23:38:59+02:00 Europe/Brussels
- Fixes
- Ranking of cluster elements for antiSMASH version 5
0.191800 2019-06-29 15:01:31+02:00 Europe/Brussels
- Additions
- documentation: added Manual.pod
- Roles::Domainable: added a class attribute
- Parser: added is_cluster_type_ok method
- Changes
- binaries: renamed '--type' option in '--types' (repeatable argument)
- binaries: improved the '--help' documentation
- Roles::Fillable: removed _get_class method
- Fixes
- all: fixed minor bugs
0.191620 2019-06-11 22:32:01+02:00 Europe/Brussels
- First release