0.242720 2024-09-28 15:28:56+02:00 Europe/Brussels
- Additions
- Blast: expanded list of supported remote databases (e.g., core_nt)
- Mafft: added support for options --addlong and --addfragments
- binaries: new script annotate-ali.pl
- Changes
- Blast: upgraded driver to better handle version 5 of BLAST databases
- Fixes
- Blast: updated tests to BLAST 2.16.0
- Mafft: fixed command-line bug with align_all method
0.210160 2021-01-16 22:27:34+01:00 Europe/Brussels
- Fixes
- Blast: made Blastable role taint-safe
- Blast: remote tests are now disabled by default
- Exonerate: now forces Homebrew to install historical version 2.2.0
- Hmmer: updated tests to HMMER 3.3
- Mafft: updated tests to MAFFT 7.453
0.193030 2019-10-30 21:33:56+01:00 Europe/Brussels
- Fixes
- ClustalO: fixed module filename (Clustalo.pm => ClustalO.pm)
0.191910 2019-07-10 15:50:22+02:00 Europe/Rome
- Additions
- all: now try to install external dependencies using Homebrew
- Cap3: added support for optional args to constructor
- CdHit: added autoselection of cd-hit-est for nt seqs
- Changes
- all: improved warning and error messages (now prefixed by [BMD])
- Blast: now explicitly requires perl-5.18
- Fixes
- Hmmer: updated tests to HMMER 3.2.1
- Cap3: fixed inconsistent contig names between seqs and clusters
0.181160 2018-04-26 23:43:10+02:00 Europe/Brussels
- Additions
- CdHit: added support for optional args to constructor
- Fixes
- Blast: makeblastdb and blastdbcmd now also honor BMD_BLAST_BINDIR
- Blast: disabled some tests failing due to unstable results
0.180770 2018-03-18 14:40:30+01:00 Europe/Brussels
- Additions
- Blast: added support for BMD_BLAST_BINDIR environment variable
- ClustalO: new driver
- Mafft: new driver
- Fixes
- CdHit: tests are now disabled in case of missing dependency
0.180270 2018-01-28 00:13:26+01:00 Europe/Brussels
- Additions
- CdHit: new driver
- Changes
- Blast: changed API for a database-centered view; breaks existing code!
- Hmmer: changed API for a model-centered view; breaks existing code!
- Fixes
- Blast::Database: now handles multipart databases (such as local nr)
- Blast: updated remote tests to BLAST 2.7.1+
0.173510 2017-12-17 15:32:25+01:00 Europe/Brussels
- first release