0.202160 2020-08-03 20:10:23+02:00 Europe/Brussels
- Additions
- 42: Optional consolidation of redundant orthologues (through CAP3 contiging)
- 42: Support for basic multithreading (--threads command-line option)
- 1331: Added 'off' value for aligner_mode (e.g., to extract UTRs)
- Changes
- 42/1331: Improved warning/error messages (prefixed by [RUN] etc)
- 42/1331: Renamed some options in YAML file (ref_brh_mode => ref_brh, trimming_mode => trim_homologues, ali_patch_mode => ali_skip_self, ls_action => ali_keep_lengthened_seqs)
- 42: Inverted columns in yaml-generator.pl mapper (IDM) files for consistency with Bio::MUST::Core
- 42: Updated yaml-generator.pl to mirror option name changes
- 42: Enabled auto-detagging of preexisting #NEW# seqs (but see ali_keep_old_new_tags)
- 42: Improved robustness of orgs and query_orgs name checking in YAML file
- Fixes
- 42: Fixed bug leading to empty tax_reports in metagenomic mode
- 42: Fixed bug where preexisting #NEW# seqs causing a "Can't call method "stringify" on an undefined value"
- 42: Fixed bug where preexisting #NEW# seqs were removed due to wrongly detected redundancy
0.190820 2019-03-23 18:19:55+01:00 Europe/Brussels
- first release