NAME

  Bio::ViennaNGS::Tutorial - A collection of basic tutorials
  demonstrating of the core components and features of the
  L<Bio::ViennaNGS> suite

DESCRIPTION

  The L<Bio::ViennaNGS> tutorial is a collection of fully documented
  pipeline scripts that have been built as a showcase for the usage
  of the L<Bio::ViennaNGS> distribution with real NGS data.

DISCLAIMER

  Many example pipelines covered here work and depend on fairly large
  real world NGS data sets in the gigabyte scale. Be prepared that
  each tutorial takes a couple of hours of CPU time to finish. When
  running the scripts locally you need to ensure that your system has
  enough hardware resources available.

DATA DOWNLOAD

  All input data required for the individual tutorial pipelines can be
  downloaded from the L<ViennaNGS data
  repository|http://nibiru.tbi.univie.ac.at/ViennaNGS/>.

TUTORIALS

Tutorial 00: Inferring detailed mapping statistics from BAM files

Tutorial 01: Finding sequence motifs in close proximity to gene starts in a set of human protein coding genes

Tutorial 02: Automatic generation of UCSC genome browser Track Hubs for visualization of ENCODE RNA-seq data

AUTHORS

Michael T. Wolfinger <michael@wolfinger.eu>

Joerg Fallmann <fall@tbi.univie.ac.at>

Florian Eggenhofer <florian.eggenhofer@tbi.univie.ac.at>

Fabian Amman <fabian@tbi.univie.ac.at<gt>

COPYRIGHT AND LICENSE

Copyright (C) 2014-2015 Michael T. Wolfinger <michael@wolfinger.eu>

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.10.0 or, at your option, any later version of Perl 5 you may have available.

This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.