NAME

export-itol.pl - Download formatted trees from iTOL

VERSION

version 0.242020

USAGE

export-itol.pl <infiles> [optional arguments]

REQUIRED ARGUMENTS

This script is based on iTOL_downloader.pl.

<infiles>

Path to input TSV tree id files [repeatable argument].

Such files are generated when uploading trees with the script import-itol.pl.

OPTIONS

--config=<file>

Path to input INI config file. When not specified, INI config files must have the same basename as infiles (but see --in-strip below) [default: none].

A config file requires at least the format argument. Supported outfile formats are: svg, pdf, eps, ps, png, newick, nexus and phyloxml.

To display all optional parameters and values, see iTOL help page: https://itol.embl.de/help.cgi#bExOpt

An example of INI config file follows:

format=svg
dpi=300
display_mode=2
current_font_name=Courier
datasets_visible=3
range_mode=2
include_ranges_legend=1

--in[-strip]=<str>

Substring(s) to strip from infile basenames before attempting to derive INI infiles [default: none].

--out[-suffix]=<suffix>

Suffix to append to tree file basenames for deriving outfile names [default: none].

--version

--usage

--help

--man

Print the usual program information

AUTHOR

Denis BAURAIN <denis.baurain@uliege.be>

CONTRIBUTOR

Valerian LUPO <valerian.lupo@doct.uliege.be>

COPYRIGHT AND LICENSE

This software is copyright (c) 2013 by University of Liege / Unit of Eukaryotic Phylogenomics / Denis BAURAIN.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.