NAME
Bio::Tools::Run::BlastPlus - A wrapper for NCBI's blast+ suite
SYNOPSIS
Give standard usage here
DESCRIPTION
Blast+ is NCBI's successor to the blastall family of programs.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing listsSupport
Please direct usage questions or support issues to the mailing list:
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
http://redmine.open-bio.org/projects/bioperl/AUTHOR - Mark A. Jensen
Email maj -at- fortinbras -dot- us
Describe contact details here
CONTRIBUTORS
Additional contributors names and emails here
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = new Bio::Tools::Run::BlastPlus();
Function: Builds a new Bio::Tools::Run::BlastPlus object
Returns : an instance of Bio::Tools::Run::BlastPlus
Args :program_version()
Title : program_version
Usage : $version = $bedtools_fac->program_version()
Function: Returns the program version (if available)
Returns : string representing location and version of the program
Note : this works around the WrapperBase::version() method conflicting with
the -version parameter for SABlast (good argument for not having
getter/setters for these)package_version()
Title : package_version
Usage : $version = $bedtools_fac->version()
Function: Returns the BLAST+ package version (if available)
Returns : string representing BLAST+ package version (may differ from version())